DISTEMIST gazetteer

<p><strong>Please, cite use:</strong></p> <p>Miranda-Escalada, A., Gasc&oacute;, L., Lima-L&oacute;pez, S., Farr&eacute;-Maduell, E., Estrada, D., Nentidis, A., Krithara, A., Katsimpras, G., Paliouras, G., &amp; Krallinger, M. (2022). Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources.&nbsp;<em>Working Notes of Conference and Labs of the Evaluation (CLEF) Forum. CEUR Workshop Proceedings</em></p> <pre><code>@article{miranda2022overview, title={Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources}, author={Miranda-Escalada, Antonio and Gascó, Luis and Lima-López, Salvador and Farré-Maduell, Eulàlia and Estrada, Darryl and Nentidis, Anastasios and Krithara, Anastasia and Katsimpras, Georgios and Paliouras, Georgios and Krallinger, Martin}, booktitle={Working Notes of Conference and Labs of the Evaluation (CLEF) Forum. CEUR Workshop Proceedings}, year={2022} }</code></pre> <p>&nbsp;</p> <p>&nbsp;</p> <p>The DISTEMIST gazetteer contains main terms and synonyms from the relevant branches of Snomed-CT for the grounding of disease mentions. There are mentions belonging to Snomed-CT hierarchies such as disorder, finding, or morphological abnormality.</p> <p>The DISTEMIST Gazetteer is also used as an <strong>additional resource</strong> in the <strong>SocialDisNER task.</strong>&nbsp;</p> <p><strong>Format</strong></p> <p>Tab-separated file with the following columns:</p> <ul> <li>code: Snomed-CT ID</li> <li>language</li> <li>term: string mention</li> <li>semantic_tag: Snomed-CT hierarchy</li> <li>mainterm: binary field, indicating whether the term is a main term, or not</li> </ul> <p>&nbsp;</p> <p><strong>DISTEMIST resources:</strong></p> <ul> <li><a href="https://temu.bsc.es/distemist/"><strong>Web</strong></a></li> <li><a href="https://doi.org/10.5281/zenodo.6408476"><strong>DISTEMIST Gold Standard</strong></a></li> <li><a href="https://doi.org/10.5281/zenodo.6458078"><strong>DISTEMIST annotation guidelines</strong></a></li> </ul> <p><strong>SocialDisNER resouress:</strong></p> <ul> <li><a href="https://temu.bsc.es/socialdisner/"><strong>Web</strong></a></li> <li><a href="https://doi.org/10.5281/zenodo.6641702"><strong>SocialDisNER corpora</strong></a></li> </ul> <p>For further information, please visit https://temu.bsc.es/livingner/ or email us at encargo-pln-life@bsc.es</p>