Peri-implantation mouse embryos

<p>3D data volumes of developing mouse embryos. The dataset consists of:<br> 1. Cell nuclei data acquired with the confocal microscope. Voxel size:&nbsp;0.207&times;0.207&times;1 &micro;m&nbsp;or 0.23.23&times;0.23&times;1 &micro;m<br> 2. Cell plasma membrane data acquired with the light-sheet microscope.</p> <p>Annotated nuclei volumes are stored in the &#39;Nuclei&#39; directory. It contains two subdirectories &#39;train&#39; and &#39;test&#39;, which were used for training a semantic segmentation network to predict the foreground pixels. There are 22 training and 13 validation stacks in the &#39;train&#39; and &#39;test&#39; directories respectively.</p> <p>Annotated plasma membrane volumes can be find inside the &#39;Membrane&#39; directory. It contains two subdirectories &#39;train&#39; and &#39;val&#39;, which were used for training a semantic segmentation network to predict the cell membranes. There are 5 training and 1 validation stacks in the &#39;train&#39; and &#39;val&#39; directories respectively.</p> <p>The data are saved as HDF5 files.&nbsp;Each HDF5&nbsp;file contains the following datasets:<br> - `raw` - input image<br> - `label` - ground truth instance segmentation</p>