Supplementary Files for PhD Thesis VP

<p>These are a collection of supplementary files and materials accompanying my thesis entitled &quot;The application of whole genome sequencing approaches to elucidate the genetic structure, phylogeny, and infection dynamics of <em>Mycobacterium avium</em> subspecies <em>paratuberculosis</em> in Ireland&quot;, as submitted to University College Dublin in January 2022 for the fulfillment of my PhD degree.&nbsp;</p>