1000 Genomes (Phase 3, GRCh37 -- split into five superpopulations)

<p>Genotype data for individuals from the 1000 Genomes project, split by superpopulation. Simple summary statistics are pre-computed and provided. Each superpopulation consists of a <strong>.bed</strong>, <strong>.bim</strong> and <strong>.fam</strong> file. The original 1000 Genomes dataset is available on the website (https://www.internationalgenome.org/), but the download page itself can be difficult to navigate. Thus, this data serves a straightforward access point to the data.</p> <p>One population, Yorubans (YRI), a subset of individuals from the African (AFR) superpopulation, is also included. Other subsets of individuals can be obtained by running PLINK2 commands on the superpopulation data.</p> <p>Data is used in (1) analysis of independence of&nbsp;LD blocks; (2) performing fine-mapping against GEUVADIS gene expression phenotypes.&nbsp;</p>