gnomAD SQLite database V3.1.2

<p>This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of 34G for WGS v2.1.1 (261.942.336 variants) and 98G for WGS v3.1.2&nbsp;(about 759.302.267 variants), and allows scientists to look for various variant annotations present in gnomAD (i.e. Allele Count, Depth, Minor Allele Frequency, etc. -&nbsp;<a href="https://github.com/KalinNonchev/gnomAD_DB/blob/master/gnomad_db/pkgdata/gnomad_columns.yaml">here</a>&nbsp;you can find all selected features given the genome version). (A query containing 300.000 variants takes ~40s.)</p> <p>It extracts from a gnomAD vcf about 23 variant annotations. You can find further infromation about the exact fields&nbsp;<a href="https://github.com/KalinNonchev/gnomAD_DB/blob/master/gnomad_db/pkgdata/gnomad_columns.yaml">here</a>.</p> <p>gnomAD SQLite database V3.1.2</p>