Host removal database: Homo sapiens, Sars-Cov-2, PhiX174

<p>💾 <strong>cleanup-db</strong></p> <p>Kraken2 database, built upon a viral sequence masked human reference from:</p> <ul> <li>Handley, Scott A. (2020). <strong>Virus+ Sequence Masked Human Reference Genome (hg19)</strong> (1.0) [Data set]. Zenodo. [<a href="https://zenodo.org/record/4116107">10.5281/zenodo.4116107</a>]</li> </ul> <p>but separating chromosomes as artificial taxa to allow for QC, and includes Sars-Cov-2 and PhiX 174</p> <p>💾 <strong>gutcheck-db</strong></p> <p>A very small DB containg some common gut bacteria and Human and Murine mitochondrial genome:</p> <ul> <li><em>Akkermansia muciniphila</em></li> <li><em>Bacteroides fragilis</em></li> <li><em>Bifidobacterium longum</em></li> <li><em>Blautia obeum strain</em></li> <li><em>Escherichia coli</em></li> <li><em>Enterococcus faecium</em></li> <li><em>Prevotella copri</em></li> </ul> <p>&nbsp;</p> <p>See: <a href="https://github.com/telatin/cleanup">https://github.com/telatin/cleanup</a></p>