LEMORTHO datasets september 2022

<p>Datasets necessary to reproduce the LEMORTHO benchmark.</p> <p>The dataset used as the reference on LEMOrtho is a customized version of the Orthobench revisited study (<a href="https://dx.doi.org/10.1093/gbe/evaa211">https://dx.doi.org/10.1093/gbe/evaa211</a><a href="https://dx.doi.org/10.1093/gbe/evaa211"> </a>, <a href="https://dx.doi.org/10.1002/bies.201100062">https://dx.doi.org/10.1002/bies.201100062</a><a href="https://dx.doi.org/10.1002/bies.201100062"> </a>), from which we removed a few problematic genes:</p> <p><code>ENSCAFP00000022898,ENSCINP00000001707, ENSCINP00000002932, ENSCINP00000010295, ENSCINP00000018374, ENSCINP00000025546, ENSCINP00000025552, ENSCINP00000027090, ENSCINP00000035497, ENSDARP00000002330, ENSDARP00000076594, ENSDARP00000131597, ENSDARP00000156542, ENSMODP00000012647, ENSMUSP00000033502, ENSP00000316782, ENSP00000358380, ENSP00000359057, ENSP00000365858, ENSP00000371923, ENSP00000463957, ENSP00000474456, ENSP00000477509, ENSP00000477979, ENSP00000478609, ENSP00000478752, ENSP00000479545, ENSP00000479693, ENSP00000480818, ENSP00000481542, ENSP00000481835, ENSP00000498781, ENSPTRP00000001775, ENSPTRP00000040053, ENSPTRP00000056359, ENSPTRP00000058531, ENSPTRP00000086593, ENSPTRP00000092368, ENSPTRP00000092968, ENSRNOP00000038111, ENSRNOP00000067336, ENSTNIP00000010123, ENSTNIP00000017372, FBpp0073951, FBpp0075520, FBpp0082643, FBpp0082970, FBpp0291496, FBpp0291497, FBpp0309618, WBGene00001184.1, WBGene00001249.1, WBGene00006925.1, WBGene00006926.1, WBGene00006927.1, WBGene00006928.1, WBGene00006929.1, WBGene00006930.1, WBGene00010139.1, WBGene00015237.</code></p> <p>To use these datasets with the standalone LEMORTHO pipeline, place each dataset in the folder $LEM_ORTHO_ROOT/benchmark/datasets/</p>