Data set containing the energy landscapes for GPO and GPP tropocollagen models under pulling forces
<p>Energy landscapes (databases of minima and transition states) for GPO and GPP repeat collagen models under constant pulling forces as explored with OPTIM and PATHSAMPLE with an AMBER force field.</p> <p>The systems are seven GPO or GPP per chain capped with ACE and NME.</p> <p> The forces applied are 0 pN (F0), 10 pN (F1), 50 pN (F2), 100 pN (F3), 250 pN (F4), 500 pN (F5) and 750 pN (F6).</p> <p>The folders contains numerous analysis scripts and graphs. Most of these assume python with numpy and pandas, as well as cpptraj from AMBERTools.</p>
ShareScore
32/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 0
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