Summary of sequence variations in strains of Sars-CoV-2

<p>This entry collects&nbsp;JSON files specifying sequence variations of different strains (aka variants)&nbsp;of&nbsp;SARS-CoV-2 based on data retrieved from <a href="https://outbreak.info/">outbreak.info</a>&nbsp;and/or <a href="https://covariants.org/variants/">covariants.org</a>. These JSON files are formatted to match the <a href="https://docs.google.com/document/d/1wFJjdyl1OASnsBNkUzUx4ME8YhVybhIWCTr3Z1fBEWQ/pub">Feature API</a> of <a href="http://aquaria.ws/covid">aquaria.ws</a>.&nbsp; File names match the&nbsp;<a href="https://www.who.int/en/activities/tracking-SARS-CoV-2-variants/">linage names</a> of VOCs and VOIs. In the case of <em>omicron</em> we have added a version (omicron_charge) that highlights charge changing residues in magenta, as well as an extra file (omicron_BA2)&nbsp;for the <a href="https://cov-lineages.org/lineage.html?lineage=BA.2">BA.2</a>/21K sister clade and a file (omicron_BA1_BA2_diff) highlighting the differences between the lineages (coloring variations in only&nbsp;BA.1 red, only BA.2 blue, in both magenta).&nbsp;<a href="https://zenodo.org/record/5792281/files/CovidVariants.pdf">CovidVariants.pdf</a>&nbsp;lists&nbsp;SARS-CoV-2 proteins together with links that show how to map&nbsp;variations onto the structures.</p>