Statistical and power calculations animal trial persistant antimicrobials and resistance levels

<p>This repository is containing the datasets with statistical analysis of the paper: "Extended period of selection pressure due to persistancy of antimicrobials in broilers."</p> <p><em>Power calculation</em></p> <ul> <li>Two CSV-files: Power calculation resistant isolates and Power calculation antibiotics</li> <li>One R-file: Power calculation antimicrobial persistent residues</li> </ul> <p><em>The phenotypic resistance</em></p> <ul> <li>R-file: Phenotypic resistance analysis trial, CSV-file: E. coli resistance per treatment</li> </ul> <p><em>The resistome analysis&nbsp;</em></p> <ul> <li>one CSV-files: Resistome workfile&nbsp;</li> <li>one R-file: Resistome statistical analysis</li> </ul> <p><em>Microbiome analysis</em><strong><em><br></em></strong></p> <ul> <li>Phyloseq object <ul> <li>R-file: Rarfied phyloseq object from biom file, CSV-file: metedata, biom-file: reads_trail&nbsp;&nbsp;</li> </ul> </li> <li>Alpha- and beta-diversity analysis<br> <ul> <li>R-file: Beta en alpha diversity animal trail, Rdata-file: rarefy.animaltrial</li> </ul> </li> <li>Microbial abundance analysis <ul> <li>R-file: relative abundance animal trial, Rdata-file: rarefy.animaltrial</li> </ul> </li> </ul>