Gene and protein sequence features augment HLA class I ligand predictions

<p>Dataset and analyses supporting the manuscript "Gene and protein sequence features augment HLA class I ligand predictions".</p> <p>The "peptides" files contain the mass-spec detected peptides obtained from HLA ligandomics performed on the indicated tumor lines.&nbsp;</p> <p>The "protein data" files contain the RNAseq data (TPM) and Ribosome profiling data (ribosome occupancy) per protein, for each tumor line.&nbsp;</p> <p>The "source data" zip archive contains the source data underlying the figures of the manuscript.</p> <p>The "HLA ligandome analyses" zip archive contains the R scripts used for all data analysis in the manuscript, including all data and output files. These analyses can also be found at https://github.com/kasbress/HLA_Ligandome_Analyses/</p> <p>&nbsp;</p> <p>&nbsp;</p>