Supplementary Tables

<p>Supplementary Tables accompaniying the following manuscript:</p> <p>Adeoye et al.&nbsp;<strong><em>Systematic Analysis of Biological Processes Reveals Gene Co-expression Modules Driving Pathway Dysregulation in Alzheimer&rsquo;s Diseas</em>e </strong><em>bioRxiv : the preprint server for biology</em> 2024.03.15.585267. 15 Mar. 2024, doi:10.1101/2024.03.15.585267. Preprint.</p> <p>A brief description of the file contents is as follows:</p> <p><strong>Supplementary Table 1.</strong> Sample metadata for all 20 donors, including post-mortem neuropathological assessments, clinical evaluations, and pathological grouping.</p> <p><strong>Supplementary Tables 2&mdash;4.</strong> The table of p-values and log fold changes for all genes included in the differential analysis test across all brain regions (MTG 2; STG 3; ETC 4) and cell types.</p> <p><strong>Supplementary Table 5. </strong>Table of pathway renaming conventions.</p> <p><strong>Supplementary Tables 6&mdash;8.</strong> Comprehensive documentation of the pathway analysis results for each brain region (MTG 6; SFG 7; ETC 8) with detailed statistical results (coefficient estimates and p-values) for the prioritized candidate pathways identified across major cell types.&nbsp;</p> <p><strong>Supplementary Tables 9&mdash;11.</strong> Results from DME analysis for each brain region (MTG 9; SFG 10; ETC 11) across all cell types.</p> <p><strong>Supplementary Table 12.</strong> List of overlapping dysregulated pathways along with corresponding statistics for each cell type.</p> <p><strong>Supplementary Table 13.</strong> List of hub genes and hDEGs in each module for all cell types across brain regions.</p> <p>Overlapping hub genes are presented in&nbsp;<strong>Supplementary Table 14</strong>.</p>