Source data for publication "A multimodal atlas of hepatocellular carcinoma reveals convergent evolutionary paths and 'bad apple' effect on clinical trajectory" in Journal of Hepatology

<p>Processed genomic and transcriptomic data for the publication <a href="https://doi.org/10.1016/j.jhep.2024.05.017">https://doi.org/10.1016/j.jhep.2024.05.017</a>.</p> <p>cnv_segmentation.tsv: CNV segmentation file from Sequenza.</p> <p>cnv_arm.tsv: Significant arm level CNV events called by GISTIC, from broad_values_by_arm.txt file.</p> <p>cnv_gene.tsv: Gene level CNV events called by GISTIC, from all_threshold_by_genes.txt file.&nbsp;</p> <p>RNA_raw_counts.tsv: Raw RNA-seq read counts from featureCounts.</p> <p>snv_indel.tsv: All SNV and Indel called with annotation from Funcotator.</p> <p>&nbsp;</p>