Figure 4 in Alternanthera yellow vein virus (AYVV); a betasatellite independent begomovirus infecting Sonchus palustris in Pakistan

Figure 4. Comparison of the phylogenetic trees of the Rep-gene (A) and CP-gene (B) of AlYVV for recombination analysis. AlYVV from different countries were colored differently. Lines show assortment of Rep gene and CP genes in different clusters showing intraspecific recombination. Rep and CP gene from AlYVV determined in this study are indicated in black boxes. Clade I contains AlYVV and clade II encompasses closely related viruses like LuYVVNV, RaLCV and AEV. The trees were arbitrarily rooted on the sequences of the Tomato leaf curl New Delhi virus (AB613826). Numbers at nodes indicate bootstrap confidence scores (1000 replicates).