Historical NCI Genomic Data Commons data (09-14-2017)

<p>Historical NCI Genomic Data Commons data (v09-14-2017). Clinical&nbsp;(&#39;phenotype&#39;) and gene expression (HTSeq FPKM-UQ).</p> <p>&nbsp;</p> <p><strong><a href="https://xenabrowser.net/datapages/?dataset=TCGA-COAD/Xena_Matrices/TCGA-COAD.GDC_phenotype.tsv&amp;host=https://gdc.xenahubs.net">TCGA-COAD.GDC_phenotype.tsv</a></strong></p> <blockquote> <p>dataset:&nbsp;phenotype - Phenotype</p> <p>cohort<a href="https://xenabrowser.net/datapages/?cohort=GDC%20TCGA%20Colon%20Cancer%20(COAD)">GDC TCGA Colon Cancer (COAD)</a><br> dataset IDTCGA-COAD/Xena_Matrices/TCGA-COAD.GDC_phenotype.tsv<br> download<a href="https://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.GDC_phenotype.tsv.gz">https://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.GDC_phenotype.tsv.gz</a>;&nbsp;<a href="https://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.GDC_phenotype.tsv.json">Full metadata</a><br> samples570<br> version11-27-2017<br> hubhttps://gdc.xenahubs.net<br> type of dataphenotype<br> authorGenomic Data Commons<br> raw data<a href="https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-90">https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-90</a><br> raw data<a href="https://api.gdc.cancer.gov/data/">https://api.gdc.cancer.gov/data/</a><br> input data formatROWs (samples) x COLUMNs (identifiers) (i.e. clinicalMatrix)<br> 570 samples X 151 identifiers<a href="https://xenabrowser.net/datapages/?host=https%3A%2F%2Fgdc.xenahubs.net&amp;dataset=TCGA-COAD%2FXena_Matrices%2FTCGA-COAD.GDC_phenotype.tsv&amp;allIdentifiers=true">All Identifiers</a><a href="https://xenabrowser.net/datapages/?host=https%3A%2F%2Fgdc.xenahubs.net&amp;dataset=TCGA-COAD%2FXena_Matrices%2FTCGA-COAD.GDC_phenotype.tsv&amp;allSamples=true">All Samples</a></p> </blockquote> <p>&nbsp;</p> <p><strong><a href="https://xenabrowser.net/datapages/?dataset=TCGA-COAD%2FXena_Matrices%2FTCGA-COAD.htseq_fpkm-uq.tsv&amp;host=https%3A%2F%2Fgdc.xenahubs.net">TCGA-COAD.htseq_fpkm-uq.tsv</a></strong></p> <blockquote> <p>dataset:&nbsp;gene expression RNAseq - HTSeq - FPKM-UQ</p> <p>cohort<a href="https://xenabrowser.net/datapages/?cohort=GDC%20TCGA%20Colon%20Cancer%20(COAD)">GDC TCGA Colon Cancer (COAD)</a><br> dataset IDTCGA-COAD/Xena_Matrices/TCGA-COAD.htseq_fpkm-uq.tsv<br> download<a href="https://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.htseq_fpkm-uq.tsv.gz">https://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.htseq_fpkm-uq.tsv.gz</a>;&nbsp;<a href="https://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.htseq_fpkm-uq.tsv.json">Full metadata</a><br> samples512<br> version09-14-2017<br> hubhttps://gdc.xenahubs.net<br> type of datagene expression RNAseq<br> unitlog2(fpkm-uq+1)<br> platformIllumina<br> ID/Gene Mapping<a href="https://gdc.xenahubs.net/download/probeMaps/gencode.v22.annotation.gene.probeMap.gz">https://gdc.xenahubs.net/download/probeMaps/gencode.v22.annotation.gene.probeMap.gz</a>;&nbsp;<a href="https://gdc.xenahubs.net/download/probeMaps/gencode.v22.annotation.gene.probeMap.json">Full metadata</a><br> authorGenomic Data Commons<br> raw data<a href="https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-80">https://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-80</a><br> raw data<a href="https://api.gdc.cancer.gov/data/">https://api.gdc.cancer.gov/data/</a><br> wranglingData from the same sample but from different vials/portions/analytes/aliquotes is averaged; data from different samples is combined into genomicMatrix; all data is then log2(x+1) transformed.<br> input data formatROWs (identifiers) x COLUMNs (samples) (i.e. genomicMatrix)<br> 60,484 identifiers X 512 samples</p> </blockquote>