Gene expression QTL lead variants in macrophages stimulated with IFNg and Salmonella

<p>Lead eQTL variants from RASQUAL and FastQTL analyses.</p> <p>Columns in the RASQUAL results:</p> <ul> <li>snp_id - id of the lead eQTL variant</li> <li>gene_id - id of the gene</li> <li>chisq - Chi-square statistics from RASQUAL</li> <li>p_nominal - Nominal p-value from RASQUAL</li> <li>p_eigen - Nominal p-value corrected by EigenMT for the number of indepedent tests in the cis region of the gene.</li> <li>n_tests - Number of independent tests estimated by EigenMT</li> <li>fdr_thresh - Empirical FDR 10% threshold. Those eQTLs for which p_eigen &lt; fdr_threshold are significant at the 10% FDR level.</li> </ul> <p>&nbsp;</p>