GEO Accession Lists by Platform
<p>Refine.bio survey list generator required CSV, tediously exported manually from GEO web interface.</p> <p>Ex:</p> <pre><code>$ head accessions/Illumina\ HiSeq\ 2000.csv</code></pre> <pre><code>"Experiment Accession","Experiment Title","Organism Name","Instrument","Submitter","Study Accession","Study Title","Sample Accession","Sample Title","Total Size, Mb","Total RUNs","Total Spots","Total Bases","Library Name","Library Strategy","Library Source","Library Selection" "SRX4195895","4","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406604","","370.5","1","15916120","795806000","4","miRNA-Seq","TRANSCRIPTOMIC","unspecified" "SRX4195894","3","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406603","","362.43","1","16021366","801068300","3","miRNA-Seq","TRANSCRIPTOMIC","unspecified" "SRX4195893","6","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406602","","407.58","1","18432342","921617100","6","miRNA-Seq","TRANSCRIPTOMIC","unspecified" "SRX4195892","5","Homo sapiens","Illumina HiSeq 2000","Kolling Institute, The University of Sydney","SRP150290","RET-altered microRNAs in MTC","SRS3406605","","347.33","1","16162471","808123550","5","miRNA-Seq","TRANSCRIPTOMIC","unspecified"</code></pre> <p> </p>
ShareScore
36/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 20
- Reuse readiness
- 8
- Engagement
- 0
Dataset details
- Repository
- zenodo
- Published
- June 24, 2018
- License
- cc-by-4.0
- DOI
- 10.5281/zenodo.1297669
Scored with release 0.9.0
ScienceDex for faculty
Your academic CV and NIH biosketch
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