SSUsearch reference dataset

<p>This is the reference databases for SSUsearch, including the files below. If you want to updated version of SILVA, please look into the <strong>&quot;readme&quot;</strong> file.</p> <p>Ali_template.ssu.silva.fasta:&nbsp;&nbsp; &nbsp;alignment template for mothur.align<br> Copy_db_cc.ssu.copyrighter.txt:&nbsp;&nbsp; &nbsp;SSU rRNA gene copy DB # in copyrighter<br> Gene_db_cc.ssu.greengene_rep.fasta:&nbsp;&nbsp; &nbsp;SSU rRNA gene referecne DB in Greengene<br> Gene_db.ssu.silva_108_rep.fasta:&nbsp;&nbsp; &nbsp;SSU rRNA gene ref DB in SILVA<br> Gene_model_org.ssu.fasta:&nbsp;&nbsp; &nbsp;E.coli SSU rRNA gene sequence, 16s_ecoli_J01695.<br> Gene_tax_cc.ssu.greengene_rep.tax:&nbsp;&nbsp; &nbsp;SSU rRNA gene taxon ref DB in Greengene<br> Gene_tax.ssu.silva_108_rep_family.tax:&nbsp;&nbsp; &nbsp;SSU rRNA gene taxon ref DB in SILVA<br> Hmm.ssu.hmm:&nbsp;&nbsp; &nbsp;2 hmms for bac + arc and euk</p> <p>&nbsp;</p> <p>Please cite the original paper:&nbsp;</p> <p>Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes</p> <p>Jiarong&nbsp;Guo,&nbsp;James R.&nbsp;Cole,&nbsp;Qingpeng&nbsp;Zhang,&nbsp;C. Titus&nbsp;Brown,&nbsp;James M.&nbsp;Tiedje</p> <p>Appl. Environ. Microbiol.&nbsp;Dec 2015,&nbsp;82&nbsp;(1)&nbsp;157-166;&nbsp;DOI:&nbsp;10.1128/AEM.02772-15</p>