Hackathon - TF-TG literature triage additional data

<p>TF = Transcription Factor, TG= target Gene</p> <p>Jamboree: manual triage/TF-TG relation annotation exercise</p> <p>Hackathon: automatic triage/TF-TG relation annotation exercise</p> <p>This link contains three files:</p> <ul> <li> <p>Exp_methods: A list of experimental methods used in the study of transcription factor and target gene interactions. These method names might be useful as semantic features or to index records characterizing experimentally TF-TG relations.</p> <ul> <li> <p>Name: <a href="https://zenodo.org/record/2562967/files/GREEKC_Hackathon_Exp_methods.zip?download=1">GREEKC_Hackathon_Exp_methods.zip</a></p> </li> <li> <p>Example: TRE_EM_prl_2 &nbsp;&nbsp;&nbsp;Electric Mobility Shift</p> </li> <li> <p>Format: tsv-separated columns (method Id, method name/alias)</p> </li> </ul> </li> <li> <p>Hs_tf_hgnc_ncbigeneid: A list of human transcription factor HUGO gene symbols and their respective Entrez Gene NCBI gene identifier. This gene list might be useful as features for the literature triage systems.</p> <ul> <li> <p>Name: <a href="https://zenodo.org/record/2562967/files/GREEKC_Hackathon_hs_tf_hgnc_ncbigeneid.zip?download=1">GREEKC_Hackathon_hs_tf_hgnc_ncbigeneid.zip</a></p> </li> <li> <p>Example: ADNP &nbsp;&nbsp;&nbsp;23394</p> </li> <li> <p>Format: tsv-separated columns (HUGO gene symbol Id, Entrez Gene Id)</p> </li> </ul> </li> <li> <p>Sentences_methods: A list sentences that contain automatically labeled mentions of experimental method that can be used to characterize TF-TG interactions. This dataset might be useful as a more fine-grained additional training set as a considerable number of sentences to describe TF-TG interactions together with the experimental technique used to characterize them.</p> <ul> <li> <p>Name: <a href="https://zenodo.org/record/2562967/files/GREEKC_Hackathon_sentences_methods.zip?download=1">GREEKC_Hackathon_sentences_methods.zip</a></p> </li> <li> <p>Example:&nbsp;23675312 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp; &nbsp;A &nbsp;&nbsp;&nbsp;&nbsp; &nbsp;7 &nbsp;&nbsp;&nbsp;&nbsp; &nbsp;We used chromatin immunoprecipitation (ChIP) experiments to show that Bck2 localizes to the promoters of M/G1-specific genes, in a manner dependent on functional ECB elements, as well as to the promoters of G1/S and G2/M genes.</p> </li> <li> <p>Format: tsv-separated columns (PubMed ID (PMID), text type (A=abstract, T= Title), sentence number, sentence text string)</p> </li> </ul> </li> </ul>