RZooRoH: an R package to characterize individual genomic autozygosity and identify homozygous-by-descent segments

<p>these are two files used to test the RZooRoH package in the manuscript:<br> RZooRoH: an R package to characterize genomic autozygosity and identify homozygous-by-descent segments<br> A.R. Bertrand, N.K. Kadri, L. Flori, M. Gautier and T. Druet</p> <p>Each row represents a SNP. The files contain first 5 information columns followed by the genotyes (1 row per individual):<br> 1 Chromosome number<br> 2 Marker name<br> 3 Position in bp<br> 4 Allele 1<br> 5 Allele 2</p> <p>Genotypes are coded as 0, 1 and 2 for AA, AB and BB and 9 for missing.</p> <p>The file geno_sim15_5col.txt contains the simulated genotypes: 25000 markers and 500 individuals.<br> The file filtered_soay_5col.txt contains the sheep genotype data: 47365 markers and 110 individuals.</p> <p>The origin of the files is described in the paper.<br> The simulated data set is from Druet and Gautier (2017) whereas the sheep data comes from Kijas et al. (2012).</p>