Supplementary phylogenetic data for Manzano-Marín et. al. 2020 "Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems"

<p>Supplementary data for Manzano-Mar&iacute;n et. al. 2019 &quot;Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids&#39; di-symbiotic systems&quot;.</p> <p>The data set consists of four folders:</p> <p>1) &quot;Buchnera_phylo&rdquo;: PHYLIP-formatted file used for phylogenetic reconstruction of <em>Buchnera</em> and resulting tree in&nbsp;NEWICK&nbsp;format.</p> <p>2) &quot;Erwinia_phylo&rdquo;:&nbsp;PHYLIP-formatted file used for phylogenetic reconstruction of <em>Erwinia</em> and resulting tree in&nbsp;NEWICK&nbsp;format.</p> <p>3) &quot;Hamiltonella_phylo&rdquo;: FASTA-formatted nucleotide alignment files of each gene and NEXUS-formatted files used for Bayesian phylogenetic reconstruction of&nbsp;<em>Hamiltonella</em>&nbsp;symbionts.</p> <p>4) &quot;HGT_genes&quot;:&nbsp;FASTA-formatted nucleotide alignment files of each horizontally transferred gene&nbsp;and non-horizontally transferred genes nupC, and&nbsp;<em>gpmA</em>.&nbsp;Also, NEXUS-formatted files used for Bayesian phylogenetic reconstruction and of resulting trees.</p> <p>5) &quot;Tn3_pylo&quot;:&nbsp;FASTA-formatted amino acid&nbsp;alignment files of mobile elements related to the Tn3 family resolvase/invertase found in <em>Hamiltonella</em>-associated&nbsp;<em>Erwinia haradaeae</em>&nbsp;symbionts.&nbsp;Also, NEXUS-formatted files used for Bayesian phylogenetic reconstruction and of resulting trees.</p>