Cellulose test input dataset for simulations with Galaxy and BRIDGE
<p>This coordinate and protein structure file dataset is that of cellulase and octaose substrate <em>in vacuo</em>. It has been derived from the <a href="https://www.rcsb.org/structure/7cel">7CEL PDB</a> structure of a fungal cellobiohydrolase. </p> <p>The original enzyme has been modified to revert the mutation at position 217 and to include disulfide bonds. The octaose substrate is an oligosaccharide consisting of 8 beta 1-4 linked glucose monomers. </p> <p>The files includes are: </p> <ul> <li><strong>cbh1test.crd</strong>: the coordinates of the entire system (protein and substrate) in CHARMM coordinate format. </li> <li><strong>cbh1test.psf</strong>: the CHARMM protein structure file which contains lists of molecular information including atomic masses, all bond pairs, angle triples and so on.</li> </ul>
ShareScore
40/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 4
Topics
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