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Homologous membrane protein structures (HOMEP) version 3

<p><strong>Homologous membrane protein structures (HOMEP)</strong> version 3 (created 2013)<br> An updated version of v2&nbsp;<a href="https://doi.org/10.5281/zenodo.2646539">10.5281/zenodo.2646539</a>&nbsp;and&nbsp;v1:&nbsp;<a href="https://doi.org/10.5281/zenodo.2646534">10.5281/zenodo.2646534</a></p> <p><strong>Table 1</strong> =&nbsp;Alpha-helical membrane protein structures&nbsp;in the HOMEP3 data set (2013), listed by family<br> From Stamm M, Forrest LR, Proteins 2015 (Supplementary Table 1):<a href="http://https://www.ncbi.nlm.nih.gov/pubmed/26178143">&nbsp;https://www.ncbi.nlm.nih.gov/pubmed/26178143</a>&nbsp;</p> <p>Contains the following columns:<br> Protein family, Protein databank identifier, Chain identifier, Name, Source organism, Resolution (&Aring;)</p> <p>&nbsp;</p> <p><strong>Table 2</strong> =&nbsp;Beta-barrel&nbsp;membrane protein structures&nbsp;in the HOMEP3 data set (2013), listed by family<br> From Stamm M, Forrest LR, Proteins 2015 (Supplementary&nbsp;Table 2)</p> <p>Contains the following columns:<br> Protein family, Protein databank identifier, Chain identifier, Name, Source organism, Resolution (&Aring;)</p> <p>&nbsp;</p> <p><strong>HOMEP3_pairs_alpha.txt</strong><br> List of all pairs of protein structure chains of&nbsp;alpha-helical proteins</p> <p>&nbsp;</p> <p><strong>HOMEP3_pairs_beta.txt</strong><br> List of all pairs of protein structure chains of&nbsp;beta-barrel proteins</p> <p>&nbsp;</p> <p><strong>HOMEP3_pdbs.tar.gz</strong><br> All pdb files for individual chains&nbsp;in both alpha-helical and beta-barrel subsets</p>

ShareScore

44/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
8
Access
12
Reuse readiness
8
Engagement
8

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