Simulation POPC_512_TM4_10_5up_5down_NaCl_150mM_310K membrane

<p><strong>Title publication: </strong><em>A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction</em></p> <p><strong><strong>Year publication:</strong></strong><strong> </strong>2018</p> <p><strong>DOI publication: </strong>10.1021/acscentsci.7b00582</p> <p><strong>Description:</strong> Simulation POPC membrane containing ten LAPTM4B-TM4 peptides and 9 ceramide (CER160) originally in the water phase using charmm36 at 310K.</p> <p><strong>MD engine:</strong> gromacs 5.1.2</p> <p><strong>Force field</strong>: charmm36</p> <p><strong>Temperature</strong>: 310 K</p> <p><strong>Pressure:</strong> 1 bar</p> <p><strong>Simulation time</strong>: 4190 ns</p> <p><strong>Saving frequency</strong>: 100 ps</p> <p><strong>Molecular content</strong>:</p> <p>TM4 &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp; 10<br> POPC&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;512<br> SOL&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 20470<br> NA&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 55<br> CL&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 65</p> <p><strong>Additional </strong><strong>information</strong>:<br> &nbsp;&nbsp;&nbsp;&nbsp;* Membrane containing LAPTM4B TM4 peptides (Ac-CLVLIILLFISIILTFKGYLISCVWNC-NH2).</p>