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Systematic assessment of burst impurity in confocal-based single-molecule fluorescence detection using Brownian motion simulations - photon timetag simulation files

<p>Attached are the photon timestamp and channels simulated for different 3D diffusing molecules simulations at different conditions (simulation was performed by PyBroMo).</p> <p>Each of the files has, in its name, a code. The meaning of the codes are as following:</p> <pre>f32445 - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s - 60 second simulation using a numerical PSF model&nbsp;</pre> <pre>a01f8f - 15 molecules at a concentration of 31 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;- 60 second simulation using a numerical PSF model</pre> <pre>9ff667 - 15 molecules at a concentration of 15.5 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;- 60 second simulation using a numerical PSF model</pre> <pre>71154a - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 22.5 micron^2/s&nbsp;- 60 second simulation using a numerical PSF model</pre> <pre>ad926d - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 5.625 micron^2/s&nbsp;- 60 second simulation using a numerical PSF model</pre> <pre>1ab235 - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s - 180 second simulation using a numerical PSF model</pre> <pre>d00978 - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 5.625 micron^2/s&nbsp;- 180 second simulation using a numerical PSF model</pre> <p>&nbsp;</p> <pre>2469bb - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s - 60 second simulation using a Gaussian PSF model&nbsp;</pre> <pre>4be121 - 15 molecules at a concentration of 31 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;- 60 second simulation using a Gaussian PSF model</pre> <pre>a7088f - 15 molecules at a concentration of 15.5 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;- 60 second simulation using a Gaussian PSF model</pre> <pre>023983 - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 22.5 micron^2/s&nbsp;- 60 second simulation using a Gaussian PSF model</pre> <pre>653f61 - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 5.625 micron^2/s&nbsp;- 60 second simulation using a Gaussian PSF model</pre> <pre>4f06ee - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s - 180 second simulation using a Gaussian PSF model</pre> <pre>dec32c - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 5.625 micron^2/s&nbsp;- 180 second simulation using a Gaussian PSF model</pre> <p>&nbsp;</p> <pre>85b0a1 - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;, 10 of which belong to a sub-population with a mean FRET efficiency of 0.75, and the leftover 5 belong to another sub-populations with a mean FRET efficiency of 0.50&nbsp;- 60 second simulation using a Numerical PSF model</pre> <pre>964ef3 - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;, 10 of which belong to a sub-population with a mean FRET efficiency of 0.75, and the leftover 5 belong to another sub-populations with a mean FRET efficiency of 0.50&nbsp;- 180 second simulation using a Numerical PSF model</pre> <p>&nbsp;</p> <pre>f28f6e - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;, 10 of which belong to a sub-population with a mean FRET efficiency of 0.75, and the leftover 5 belong to another sub-populations with a mean FRET efficiency of 0.50&nbsp;- 60 second simulation using a Gaussian PSF model</pre> <pre>c311dd - 15 molecules at a concentration of 62 pM, with a diffusion coefficient of 90 micron^2/s&nbsp;, 10 of which belong to a sub-population with a mean FRET efficiency of 0.75, and the leftover 5 belong to another sub-populations with a mean FRET efficiency of 0.50&nbsp;- 180 second simulation using a Gaussian PSF model</pre>

ShareScore

40/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
20
Reuse readiness
8
Engagement
0

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