Dataset: SiNGA Simulation of cAMP sink development in different environments.

<p>The setup files for the simulation of cAMP sink development in different environments. The results of the simulations were presented on the ISMB Sysmod Meeting 2019.</p> <p>To run a simulation the desired simulation setup file must be located in the same directory as the &quot;singa-run.jar&quot; and must be named&nbsp;&quot;simulation_setup.json&quot;. Afterwards the simulation can be run using the &quot;java -jar singa-run.jar&quot; command on any system with&nbsp;Java 8 installed. Simulation parameters may be altered by changing the simulation setup file. The &quot;singa-run&quot; jar in this depository automatically runs all simulations resulting from all combinations of the &quot;alternative values&quot; annotated to concentrations or features.</p> <p>Results are saved in an &quot;observations&quot; folder that is created in the same directory. Each simulation creates one folder containing the variations used and the trajectory of the simulation.</p> <p>More information are available on the&nbsp;<a href="https://github.com/singa-bio/singa">SiNGA github</a>.</p>