Intra-host single-genome sequences of SARS-CoV-2 spike from people without HIV and people living with HIV

<p>Supporting data and code for the study "Rapid Intra-host Diversification and Evolution of SARS-CoV-2 in Advanced HIV Infection" (2024) by Ko &amp; Radecki et al.</p> <p>See <a href="https://github.com/niaid/UMI-pacbio-pipeline/releases/tag/SC2-HIV-demo">the GitHub</a> for demo of SGS and haplotype generation using example data from the study.</p> <p>Raw sequencing data are deposited at <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1055920">PRJNA1055920</a>.</p> <p>READMEs are available within individual folders and releases.</p>