Molecular Dynamics simulations (filtered small system)

<p><span>Molecular Dynamics of E. coli ribosomes stalled by the nascent peptide SecM(Ms).</span></p> <p><span>Four systems were simulated: Control, K, N and WT.<span>&nbsp;</span></span></p> <p><span>To facilitate analysis, each system was filtered to include all the residues within 15 Angstroms of the </span><span>nascent chain, including the nascent chain, and the complete tRNA. The resulting structure is shared as a </span><span>pdb file with suffix "within15_tunnel.pdb"</span></p> <p><span>For each system, 5x50 ns trajectories were simulated. </span><span>And the concatenated trajectory is shared (suffix: "within15_concatenated.xtc")</span></p>