Loss of multi-level 3D genome organization during breast cancer progression - Third-party datasets

<p>This entry contains the following datasets:</p> <p>Datasets used by <a href="https://github.com/dixonlab/hic_breakfinder" target="_blank" rel="noopener">hic_breakfinder</a>:</p> <ul> <li>inter_expect_1Mb.hg38.txt</li> <li>intra_expect_100kb.hg38.txt</li> </ul> <p>FIles were originally downloaded from <a href="https://salkinstitute.box.com/s/m8oyv2ypf8o3kcdsybzcmrpg032xnrgx" target="_blank" rel="noopener">this</a> URL.</p> <p>Datasets used by <a href="https://github.com/parklab/HiNT" target="_blank" rel="noopener">HiNT</a>:</p> <ul> <li>backgroundMatrices_hg38.zip</li> <li>refData_hg38.zip</li> </ul> <p>Files were originally downloaded from the following URLs: <a href="http://compbio.med.harvard.edu/hint/refData/" target="_blank" rel="noopener">link1</a>, <a href="http://compbio.med.harvard.edu/hint/backgroundMatrices/" target="_blank" rel="noopener">link2</a>.</p> <p>The above datasets are used by the data analysis workflows hosted at <a href="https://github.com/paulsengroup/2022-mcf10a-cancer-progression" target="_blank" rel="noopener">paulsengroup/2022-mcf10a-cancer-progression.</a><br>The results produced by running the workflows from the above repository were used as part of the following study:<br><strong>Loss of multi-level 3D genome organization during breast cancer progression</strong></p>