Shared evolutionary origin and clade-specific signatures of symbiosis in lifestyle distinctive fungi

<p>Data repository established for the appendix dataset documented in Scarlet M. Au&rsquo;s MPhil in Biological Science (Plant Sciences) thesis, submitted to the University of Cambridge, UK.&nbsp;</p> <p><strong>Appendix A.</strong> List of 182 species from the Mucoromycota subphylum</p> <p><strong>Appendix B.</strong> List of 535 BUSCO single copy genes identified for single copy phylogenies.&nbsp;</p> <p>1) Appendix B-1 contains BUSCO genes mostly annotated relative to the <em>Rhizophagus irregularis </em>DAOM_181602_v1.0. For genes that were missing, annotations were drawn from the Lyc-1 and the <em>Thamnidium elegans</em> genomes.&nbsp;</p> <p>2) Appendix B-2 contains BUSCO genes annotated relative to the <em>Rhizophagus irregularis </em>DAOM_181602_v1.0 genome.&nbsp;</p> <p>3) Appendix B-3 contains BUSCO genes annotated relative to the Lyc-1 genome.</p> <p>4) Appendix B-4 contains BUSCO genes annotated relative to the <em>Thamnidium elegans</em> genome.&nbsp;</p> <p><strong>Appendix C.</strong> Hierarchical clustering by orthogroup absence/presence and abundance.&nbsp;</p> <p>1) Full hierarchical clustering by row (species) and columns (orthogroups) for binary matrix.&nbsp;</p> <p>2) Full hierarchical clustering by row (species) and columns (orthogroups) for normalised matrix.&nbsp;</p> <p>3) Full hierarchical clustering by row (species) only for binary matrix.&nbsp;</p> <p>4) Full hierarchical clustering by row (species only) for normalised matrix.</p> <p><strong>Appendix D. </strong>36 out of 72 orthogroups shared between MFRE and AM fungal genomes contain known functional annotations.&nbsp;</p> <p>&nbsp;</p>