Supplementary data: ONT for Listeria monocytogenes outbreak detection

<p>Supplementary data for the publication "Oxford Nanopore&rsquo;s 2024 sequencing technology for Listeria monocytogenes outbreak detection and source attribution: progress and clone-specific challenges"</p> <ol> <li><em>L. monocytogenes </em>assemblies generated from&nbsp; <ul> <li>Illumina-only data (shovill)</li> <li>ONT-only data (100x coverage, sup@v5.0 + flye + flye polisher + medaka [model r103_min_high_g360])</li> <li>ONT + Illumina data (100x ONT coverage, sup@v5.0 + flye + flye polisher + polypolish)</li> </ul> </li> <li>Raw ONT pod5 data from three<em> L. monocytogenes </em>isolates (N19-1094, N21-2956, N23-1883) with GAAG6mAC / GT4mCTTC methylations, among other methylated motifs</li> </ol>