Metagenome quality metrics and taxonomical annotation visualization through the integration of MAGFlow and BIgMAG (Sup. Material)

<p>Dataset encompassing:</p> <ul> <li>The recovered MAGs by 6 different metagenomics pipelines (ATLAS, DATMA, MetaWRAP, MUFFIN, nf-core/mag and SnakeMAGs) using a mock community as input (SRR8359173 and SRR9328980), complemented with the output from MAGFlow (v1.0.0) using these MAGs as input for their quality assessment and taxonomical annotation.&nbsp;</li> <li>The MAGs produced by nf-core/mag using rice/rhizosphere sequenced libraries (PRJNA663614, PRJNA448773 and PRJNA645385) in either single assembly/single binning or co-assembly/co-binning mode, complemented with the output from MAGFlow (v1.0.0) using these MAGs as input for their quality assessment and taxonomical annotation.</li> <li>Scripts, commands and configuration files to run the different pipelines (ATLAS, DATMA, MetaWRAP, MUFFIN, nf-core/mag and SnakeMAGs) and reproduce the experimental conditions.</li> <li>Outputs, commands and scripts to run Metabinner and Semibin in their default configuration using the rice soil samples co-assembly, along with the MAGFlow (v1.1.0) output to compare these binners against MetaBAT2.</li> </ul>