Libraries of LTR-RTs from different tools

<p>LTR libraries including the output from following tools:</p> <ul> <li>Inpactor2</li> <li>LTR_harvest</li> <li>LTR_finder</li> <li>LTR_detector</li> <li>LTR_retriever</li> <li>FiLTR (referred to as HybridLTR in the file)</li> </ul> <p>For<strong> Inpactor2, LTR_harvest, LTR_finder, and LTR_detector</strong>, we first partition their intact LTR-RTs into terminal and internal sequences. We then use <strong>cd-hit-est</strong> with parameters <code>-aS 0.95 -aL 0.95 -c 0.8</code> to generate consensus sequences.</p> <p>Since <strong>LTR_retriever </strong>and <strong>FiLTR</strong> can accept outputs from tools such as <strong>LTR_harvest, LTR_finder, and LtrDetector,</strong> as input, we have tested all kinds of input combinations.</p>