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TABLE 4 in Lilium shenxianjuense (Liliaceae), a new species from Zhejiang, China

<p><b>TABLE 4.</b> Genes contained in the <i>Lilium shenxianjuense</i> plastome. aGene with one intron. bGene with two introns. cGenes located in the inverted repeat regions.</p><table><tbody><tr><th>Category</th><th>Gene group</th><th>Gene name</th></tr></tbody><tbody><tr><th></th><td>Large subunit ribosomal proteins</td><td><i>rpl2</i> <i>a</i>, <i>c</i>, <i>rpl14</i>, <i>rpl16</i> <i>a</i>, <i>rpl20</i>, <i>rpl22</i>, <i>rpl23</i> <i>c</i>, <i>rpl30</i>, <i>rpl32</i>, <i>rpl33</i>, <i>rpl36</i></td></tr><tr><th></th><td>Small subunit ribosomal proteins</td><td><i>rps2</i>, <i>rps3</i>, <i>rps4</i>, <i>rps7</i> <i>c</i>, <i>rps8</i>, <i>rps11</i>, <i>rps12</i> <i>b</i>, <i>c</i>, <i>rps14</i>, <i>rps15</i>, <i>rps16</i> <i>a</i>, <i>rps18</i>, <i>rps19</i></td></tr><tr><th></th><td>RNA polymerase subunits</td><td><i>rpoA</i>, <i>rpoB</i>, <i>rpoC1</i> <i>a</i>, <i>rpoC2</i></td></tr><tr><th>Self-replication</th><td>Ribosomal RNAs</td><td><i>rrn4.5</i> <i>c</i>, <i>rrn5</i> <i>c</i>, <i>rrn16</i> <i>c</i>, <i>rrn23</i> <i>c</i></td></tr><tr><th></th><td></td><td><i>trnA-UGCa</i>, <i>c</i>, <i>trnC-GCA</i>, <i>trnD-GUC</i>, <i>trnE-UUC</i>, <i>trnF-GAA</i>, <i>trnG-GCC</i>, <i><i>trnG-UCCa</i>, <i>trnH-GUGc</i>, <i>trnI-CAUc</i>, <i>trnI-GAUa</i>, <i>c</i>, <i>trnK-UUUa</i>, <i>trnL-CAAc</i>, <i>trnL-UAAa</i>,</i></td></tr><tr><th></th><td>transfer RNAs</td><td><i>trnL-UAG</i>, <i>trnfM-CAU</i>, <i>trnM-CAU</i>, <i>trnN-GUUc</i>, <i>trnP-UGG</i>, <i>trnQ-UUG</i>, <i><i>trnR-ACGc</i>, <i>trnR-UCU</i>, <i>trnS-GCU</i>, <i>trnS-GGA</i>, <i>trnS-UGA</i>, <i>trnT-GGU</i>, <i>trnT-UGU</i>, <i><i>trnV-GACc</i>, <i>trnV-UACa</i>, <i>trnW-CCA</i>, <i>trnY-GUA</i></i></i></td></tr><tr><th></th><td>photosystem I</td><td><i>psaA</i>, <i>psaB</i>, <i>psaC</i>, <i>psaI</i>, <i>psaJ</i></td></tr><tr><th></th><td>photosystem II</td><td><i>psbA</i>, <i>psbB</i>, <i>psbC</i>, <i>psbD</i>, <i>psbE</i>, <i>psbF</i>, <i>psbH</i>, <i>psbI</i>, <i>psbJ</i>, <i>psbK</i>, <i>psbL</i>, <i>psbM</i>, <i>psbN</i>, <i>psbT</i>, <i>psbZ</i></td></tr><tr><th></th><td>NADH dehydrogenase</td><td><i>ndhAa</i>, <i>ndhBa</i>, <i>c</i>, <i>ndhC</i>, <i>ndhD</i>, <i>ndhE</i>, <i>ndhF</i>, <i>ndhG</i>, <i>ndhH</i>, <i>ndhI</i>, <i>ndhJ</i>, <i>ndhK</i></td></tr><tr><th>Photosynthesis</th><td>cytochrome b/f complex</td><td><i>petA</i>, <i>petBa</i>, <i>petDa</i>, <i>petG</i>, <i>petL</i>, <i>petN</i></td></tr><tr><th></th><td>ATP synthase</td><td><i>atpA</i>, <i>atpB</i>, <i>atpE</i>, <i>atpFa</i>, <i>atpH</i>, <i>atpI</i></td></tr><tr><th></th><td>ATP-dependent protease subunit p</td><td><i>clpPb</i></td></tr><tr><th></th><td>large subunit of rubisco</td><td><i>rbcL</i></td></tr><tr><th></th><td>maturase K</td><td><i>matK</i></td></tr><tr><th></th><td>envelope membrane protein</td><td><i>cemA</i></td></tr><tr><th>Other genes</th><td>subunit of acetyl-CoA-carboxylase</td><td><i>accD</i></td></tr><tr><th></th><td>c-type cytochrome synthesis gene</td><td><i>ccsA</i></td></tr><tr><th></th><td>hypothetical chloroplast reading frames</td><td><i>ycf1</i>, <i>ycf2</i> <i>c</i>, <i>ycf3</i> <i>b</i>, ycf4</td></tr></tbody></table>

ShareScore

28/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
8
Reuse readiness
8
Engagement
0

Topics

Dataset details

Repository
zenodo
Published
March 10, 2024
License
notspecified
DOI
10.5281/zenodo.13872738

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