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TABLE 1 in Molecular phylogeny and morphology reveal a new species of genus Rhodocybe sensu stricto Maire (Entolomataceae; Agaricales) from Pakistan

TABLE 1. — Voucher/strain/isolate, country, GenBank/UNITE accession number, and reference for the specimens included in nrITS and combined ITS-28S phylogenetic analysis. The sequences produced during this study are shown in bold font.<table><tbody><tr><th></th><th>GenBank/UNITE</th><th></th><th></th></tr></tbody><tbody><tr><th></th><td>accession no.</td><td></td><td></td></tr><tr><th>Taxon name Voucher/strain/isolate</th><td>nrITS</td><td>28S</td><td>Country</td><td>Reference</td></tr><tr><th>Calocybe carnea (outgroup) CBS552.50</th><td>AF357028</td><td>AF223178</td><td>–</td><td>Hofstetter et al. 2002</td></tr><tr><th>Clitocella fallax CBS605.79</th><td>AF357018</td><td>AF223165</td><td>–</td><td>Hofstetter et al. 2002</td></tr><tr><th>Clitocella fallax CBS129.63</th><td>AF357017</td><td>AF223166</td><td>–</td><td>Hofstetter et al. 2002</td></tr><tr><th>Clitocella mundula TJB7599</th><td>DQ494694</td><td>AY700182</td><td>–</td><td>Matheny et al. 2006</td></tr><tr><th>Clitocella mundula HMJAU 7275</th><td>MN061331</td><td>MN065723</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>Clitocella orientalis KUN-HKAS 75664 (Liu53)</th><td>MN061332</td><td>MN065726</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>Clitocella orientalis KUN-HKAS 75548 (Cai794)</th><td>MN061333</td><td>MN065727</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>Clitopilopsis albida KUN-HKAS 104519 (JSP224)</th><td>MN061335</td><td>MN065730</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>Clitopilopsis albida KUN-HKAS 104520 (JSP225)</th><td>MN061336</td><td>MN065731</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>Clitopilopsis hirneola MEN 199956</th><td>KC710132</td><td>GQ289211</td><td>–</td><td>Morgado et al. 2013</td></tr><tr><th>Clitopilopsis hirneola CBS 126.46</th><td>MH856141</td><td>AF223163</td><td>France</td><td>Vu et al. 2019</td></tr><tr><th>Clitopilus passeckerianus CBS 299.35</th><td>MH855682</td><td>MH867198</td><td>Austria</td><td>Vu et al. 2019</td></tr><tr><th>Clitopilus scyphoides KRAM5</th><td>MN744420</td><td>MN744422</td><td>India</td><td>-</td></tr><tr><th>Clitopilus scyphoides CBS 127.47</th><td>MH856181</td><td>MH867707</td><td>France</td><td>Vu et al. 2019</td></tr><tr><th>Clitopilus sinoapalus KUN-HKAS 77037 (Wu865)</th><td>MN061321</td><td>MN065713</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>Clitopilus sinoapalus KUN-HKAS 101191</th><td>MN061322</td><td>MN065711</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>(Yang6002)</th><td></td><td></td><td></td><td></td></tr><tr><th>Clitopilus umbilicatus KUN-HKAS 80310 (Han79)</th><td>MN061324</td><td>MN065716</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>Clitopilus umbilicatus KUN-HKAS 104509</th><td>MN061327</td><td>MN065719</td><td>China</td><td>Jian et al. 2020</td></tr><tr><th>(Wu2506)</th><td></td><td></td><td></td><td></td></tr><tr><th>Entoloma caccabus MEN 200324</th><td>KC710063</td><td>GQ289155</td><td>–</td><td>Morgado et al. 2013</td></tr><tr><th>Entoloma conferendum MEN 200330</th><td>KC710055</td><td>KC710133</td><td>Slovakia</td><td>Morgado et al. 2013</td></tr><tr><th>Entoloma serrulatum LE254361</th><td>KC898447</td><td>KC898501</td><td>Russia</td><td>Morozova et al. 2014</td></tr><tr><th>Entoloma sp. Sulzbacher 433/1-D-1</th><td>LT594987</td><td>–</td><td>Brazil</td><td>-</td></tr><tr><th>Entoloma tjallingiorum LE254318</th><td>KC898411</td><td>KC898510</td><td>Russia</td><td>Morozova et al. 2014</td></tr><tr><th>Lyophyllum decastes (outgroup) JM87/16(T1)</th><td>AF357059</td><td>AF042583</td><td>–</td><td>Hofstetter et al. 2002</td></tr><tr><th>Rhodocybe asanii KATO:Fungi:3657</th><td>KX834265</td><td>–</td><td>Türkiye</td><td>Sesli & Vizzini 2017</td></tr><tr><th>Rhodocybe asanii KATO:Fungi:3659</th><td>NR_154442</td><td>NG060176</td><td>Türkiye</td><td>Sesli & Vizzini 2017</td></tr><tr><th>Rhodocybe asyae KATO:Fungi:3653</th><td>KX834268</td><td>–</td><td>Türkiye</td><td>Sesli & Vizzini 2017</td></tr><tr><th>Rhodocybe asyae KATO:Fungi:3640</th><td>NR_154443</td><td>NG060177</td><td>Türkiye</td><td>Sesli & Vizzini 2017</td></tr><tr><th>Rhodocybe brunneoaurantiaca CUH AM720</th><td>MW023201</td><td>MW023223</td><td>India: West Bengal</td><td>Dutta et al. 2021</td></tr><tr><th>Rhodocybe brunneoaurantiaca CAL 1825</th><td>MW031906</td><td>MW031916</td><td>India: West Bengal</td><td>Dutta et al. 2021</td></tr><tr><th>Rhodocybe caelata JVG 1070904-2</th><td>KU862855</td><td>–</td><td>Spain</td><td>Vizzini et al. 2016</td></tr><tr><th>Rhodocybe formosa Herb. B. Picillo 12/208</th><td>KU862858</td><td>–</td><td>Italy</td><td>Vizzini et al. 2016</td></tr><tr><th>Rhodocybe formosa LIP JVG 1061015</th><td>KU862856</td><td>–</td><td>Spain</td><td>Vizzini et al. 2016</td></tr><tr><th>Rhodocybe fumanellii MCVE:29550</th><td>NR_166243</td><td>NG068264</td><td>Italy</td><td>Vizzini et al. 2018</td></tr><tr><th>Rhodocybe fusipes DLK 587</th><td>MN306210</td><td>–</td><td>Brazil</td><td>Silva-Filho et al. 2020</td></tr><tr><th>Rhodocybe fusipes DLK 298</th><td>MN306209</td><td>–</td><td>Brazil</td><td>Silva-Filho et al. 2020</td></tr><tr><th>Rhodocybe incarnata REH5369</th><td>MT254071</td><td>–</td><td>Venezuela</td><td>Silva-Filho et al. 2020</td></tr><tr><th>Rhodocybe luteobrunnea CAL:1322</th><td>NR_154434</td><td>NG060167</td><td>India</td><td>–</td></tr><tr><th>Rhodocybe matesina MCVE:29261</th><td>KY629962</td><td>KY629964</td><td>Italy</td><td>–</td></tr><tr><th>Rhodocybe matesina MCVE:29262</th><td>NR_154455</td><td>NG060184</td><td>Italy</td><td>–</td></tr><tr><th>Rhodocybe mellea JBSD127402</th><td>MN784993</td><td>–</td><td>Dominican Republic</td><td>Baroni et al. 2020</td></tr><tr><th>Rhodocybe mellea CORT013885</th><td>MN784992</td><td>–</td><td>Dominican Republic</td><td>Baroni et al. 2020</td></tr><tr><th>Rhodocybe mellea NYBG815044</th><td>MN784995</td><td>–</td><td>Costa Rica</td><td>Baroni et al. 2020</td></tr><tr><th>Rhodocybe mellea CORT014470</th><td>MN784994</td><td>–</td><td>Belize</td><td>Baroni et al. 2020</td></tr><tr><th>Rhodocybe mellea var. depressa F. Wartchow 08-2019</th><td>MT408926</td><td>OL687341</td><td>Brazil</td><td>Xavier et al. 2022</td></tr><tr><th>Rhodocybe minutispora LIP JVG 1071101</th><td>KU862860</td><td>–</td><td>Spain</td><td>Vizzini et al. 2016</td></tr><tr><th>Rhodocybe pakistanica sp. nov. LAH37948</th><td>OR606544</td><td>OR606542</td><td>Pakistan</td><td>This study</td></tr><tr><th>Rhodocybe pakistanica sp. nov. LAH37949</th><td>OR606545</td><td>–</td><td>Pakistan</td><td>This study</td></tr><tr><th>Rhodocybe pakistanica sp. nov. LAH37947</th><td>OR606543</td><td>OR606541</td><td>Pakistan</td><td>This study</td></tr><tr><th>(holotype)</th></tr><tr><th>Rhodocybe pallidogrisea CORT 013944</th><td>KX271752</td><td>–</td><td>Australia</td><td>–</td></tr><tr><th>Rhodocybe roseiavellanea PBM4056 (TENN)</th><td>MF686525</td><td>–</td><td>United States</td><td>–</td></tr><tr><th>Rhodocybe rubrobrunnea CAL 1387</th><td>KX951452</td><td>–</td><td>India</td><td>–</td></tr><tr><th>Rhodocybe sp. Sulzbacher 340</th><td>LT594979</td><td>–</td><td>Brazil</td><td>Sulzbacher et al. 2017</td></tr><tr><th>(UFRN-fungos 2557)</th><td></td><td></td><td></td><td></td></tr><tr><th>Rhodocybe sp. Sulzbacher 413</th><td>LT594984</td><td>–</td><td>Brazil</td><td>Sulzbacher et al. 2017</td></tr><tr><th>(UFRN-fungos 2062)</th><td></td><td></td><td></td><td></td></tr><tr><th>Rhodocybe truncata CBS482/50</th><td>EF421110</td><td>AF223167</td><td>–</td><td>–</td></tr><tr><th>Rhodocybe tugrulii IMG-7316</th><td>MG050105</td><td>MG050111</td><td>United States</td><td>–</td></tr><tr><th>Rhodocybe tugrulii KATO:Fungi:3340</th><td>NR_154436</td><td>NG060175</td><td>Türkiye</td><td>–</td></tr><tr><th>Rhodophana griseobrunnea LUG 19799</th><td>MT580804</td><td>MT580803</td><td>France</td><td>–</td></tr><tr><th>Rhodophana nitellina TU106939</th><td>UDB015654</td><td>–</td><td>Estonia</td><td>–</td></tr><tr><th>Rhodophana nitellina TU106585</th><td>UDB011813</td><td>–</td><td>Estonia</td><td>–</td></tr><tr><th>Rhodophana squamulosa CAL:1262</th><td>KT180329</td><td>NG060152</td><td>India</td><td>Raj et al. 2016</td></tr></tbody></table>

ShareScore

40/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship: 8
Harmonization: 8
Access: 16
Reuse readiness: 8
Engagement: 0

Topics

Biodiversity Taxonomy