A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease

<p>***<strong>These data supersede the previous release. Please disregard data uploaded prior to October 30th as the metadata was incorrect - note the correct data in Supplementary Table 1</strong>***</p> <p>A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease.&nbsp;</p> <p>GEO ID for bam files and CellRanger pipeline output (filtered and unfiltered):&nbsp;<strong>GSE282122</strong></p> <p>TAURUS_raw_counts_annotated_final.h5ad: This file is the pooled data across all cell types</p> <p>UMAP_combined_objects.txt.gz: This file has the corresponding UMAP for pooled data</p> <p>PC_combined_objects.txt.gz: This file has the corresponding PC for pooled data</p> <p>paired_sample_list.csv: This file has the paired samples used in analysis for baseline/longitudinal analysis. For baseline analyses, please use baseline samples &gt; 6.5 inflammation score to recapitulate the analyses in the paper.</p> <p>Other data to be uploaded to Zenodo include H&amp;E slides. Please access interactive MDV browser here.</p>