Tomographic polarimetric Dataset of a Trabecular bone, used in the paper "Reconstructing three-dimensional optical anisotropy with tomographic Müller-polarimetric microscopy"

<p>Tomographic polarimetric Dataset of a Trabecular bone, used in the paper "Reconstructing three-dimensional optical anisotropy with tomographic M&uuml;ller-polarimetric microscopy".</p> <p>In the compressed folder, there is :</p> <ul> <li>The raw data recorded by the camera during the tomographic polarimetric measurements (yellow_bone_ID_001_202418_1156.h5),</li> <li>The raw data were the shifts inside each projection, that occurs sometime between polarisation states, has been corrected manually (yellow_bone_ID_001_202418_1156_pre_processing_v2.h5)</li> <li>The binned, cropped and aligned data (yellow_bone_ID_001_20231218_1039_alignment_v2_2.mat)</li> <li>The 3D reconstruction of the index elipsoid at each voxel of the synthetic object (bir TT result 1.48200 &amp; 1.4835 - scale[4, 0.000001] - coef [0.01,500] - reg weights 0.375&amp;0.0025 - itr250.mat)</li> <li>The synthetic projections linked to this synthetic object (projections + reg weights 0.375&amp;0.0025 + coef_tv [1.e-02 5.e+02] + itr250.mat)</li> </ul> <p>The reconstruction code will be published as part of our open-source software package MUMOTT including tutorials on our webpage (<a href="http://mumott.org/" target="_blank" rel="noopener noreferrer">mumott.org</a>), the data will be published over zenodo with the publication of the research paper. At the point of submission the code is available upon request<br><br>See linked publication for the full description of the dataset.</p>