Test data for HERRO
<p>Some read data that can be used for a test run of HERRO.</p> <p>e.g. </p> <p>herro inference -t 4 -m model -d 2,3 -b 32 HG002.chr19_10M_12M.fastq.gz output.fasta</p> <p> </p> <p>The data is a part of the data from </p> <p>https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=submissions/5b73fa0e-658a-4248-b2b8-cd16155bc157--UCSC_GIAB_R1041_nanopore/HG002_R1041_UL/dorado/v0.4.0_wMods/</p> <p>, preprocessed with adaptor trimming/splitting and filtered to at least 10000bp and Q10,</p> <p>and contains reads (~40x) that are aligned to 10-12Mbp of chr19 maternal/paternal of HG002 v1.0.1 assembly from https://github.com/marbl/HG002</p>
ShareScore
36/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 20
- Reuse readiness
- 8
- Engagement
- 0