Data from: Speciation and historical invasions of the Asian black-spined toad (Duttaphrynus melanostictus)

<p>This data package includes the following datasets analyzed in the corresponding publication:&nbsp;</p> <ul> <li>An alignment (fasta format) of 130,792 bp concatenating the RAD tags present in at least 80 of the 88 <em>Duttaphrynus </em>samples considered (Duttaphrynus_ddRADseq_n88p80_131kb.fas). It was used to produce the tree presented in Supplementary Fig. 1.</li> <li>An alignment (fasta format) of 83,652 bp concatenating the RAD tags present in 25 unadmixed <em>Duttaphrynus </em>samples (Duttaphrynus_ddRADseq_n25p25_84kb.fas). It was used in the phylogenetic analyses presented in Fig. 1a and Supplementary Fig. 2.</li> <li>Two alignments (fasta format) of 482,648 bp and 628,293 bp concatenating the RAD tags present in 17 and 52 samples of <em>D. melanostictus</em> s. s. and <em>D. </em>cf.<em>&nbsp;melanostictus</em>, respectively (Duttaphrynus_melanostictus_ss_West_n17p17_483kb.fas and Duttaphrynus_cf_melanostictus_East_n52p52_628kb.fas). These were used in the network analyses presented in Fig. 2b.</li> <li>Three matrices of 851 SNPs, 3364 SNPs and 4782 SNPs, genotyped in 69, 17 and 52 samples of <em>D. melanostictus</em> s. l., <em>D. melanostictus</em> s. s. and <em>D. </em>cf. <em>melanostictus</em>, respectively (Duttaphrynus_melanostictus_sl_n69p69wrs_851SNPs.str, Duttaphrynus_melanostictus_ss_West_n17p17wrs_3364SNPs.str, Duttaphrynus_cf_melanostictus_East_n52p52wrs_4782SNPs.str). These were used in the Bayesian clustering and PCA analyses presented in Fig. 2a and Supplementary Figs. 3-4.</li> <li>An alignement (fasta format) of 383 sequences of the mitochondrial gene 16S (558 bp), including 382 sequences of <em>Duttaphrynus </em>+ 1 outgroup (Duttaphrynus_16S.fas). It was used in the network analysis presented in Fig. 3b and the phylogenetic analysis presented in Supplementary Fig. 5.</li> <li>An alignement (fasta format) of 495 sequences of the mitochondrial gene&nbsp;<em>ND3 </em>(469 bp), including 494 sequences of <em>Duttaphrynus </em>+ 1 outgroup (Duttaphrynus_ND3.fas). It was used in the network analysis presented in Fig. 3b and the phylogenetic analysis presented in Supplementary Fig. 6.</li> <li>An alignement (fasta format) of 27 full or partial mitogenomes (16,844 bp), including 26 sequences of <em>Duttaphrynus </em>+ 1 outgroup (Duttaphrynus_mitogenomes.fas). It was used in the phylogenetic analyses presented in Fig. 1b and Supplementary Fig. 7.</li> </ul> <p>The meta-data associated to these datasets are provided in the corresponding publication (Supplementary Data 1 and 4).</p>