CoVerage Results

<p>Datasets generated from GISAID metadata for the figures in the CoVerage manuscript. Data includes the results for the months of November 2021 to January 2021 and January 2023 to March 2023.</p> <p>11_2021</p> <ul> <li>11-2021_fig3_lineage_dynamics_summary_statistics.csv - summary statistics or frequency data for selected pVOIs for the month of 11-2021</li> <li>11-2021_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 11-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein</li> <li>11-2021_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 11-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation</li> <li>11-2021_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 11-2021 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation</li> <li>11-2021_fig4_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 11-2021 using the scoring method of applying weights at all sites across the spike protein</li> </ul> <p>12_2021</p> <ul> <li>12-2021_fig3_lineage_dynamics_summary_statistics.csv - summary statistics or frequency data for selected pVOIs for the month of 12-2021</li> <li>12-2021_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 12-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein</li> <li>12-2021_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 12-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation</li> <li>12-2021_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 12-2021 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation</li> <li>12-2021_fig4_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 12-2021 using the scoring method of applying weights at all sites across the spike protein</li> </ul> <p>01_2022</p> <ul> <li>01-2022_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 01-2022 using the scoring technique of applying weights at known antigenic sites on the spike protein</li> <li>01-2022_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 01-2022 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation</li> <li>01-2022_fig4_antigenic_scores_map_visualization_all_sites.csv -&nbsp;</li> <li>calculated country antigenic scores for the month of 01-2022 using the scoring method of applying weights at all sites across the spike protein</li> <li>01-2022_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 01-2022 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation</li> </ul> <p>01_2023</p> <ul> <li>01-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 01-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein</li> <li>01-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 01-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation</li> <li>01-2023_fig5_antigenic_scores_map_visualization_all_sites.csv&nbsp;- calculated country antigenic scores for the month of 01-2023 using the scoring method of applying weights at all sites across the spike protein</li> <li>01-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 01-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation</li> </ul> <p>02_2023</p> <ul> <li>02-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 02-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein</li> <li>02-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 02-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation</li> <li>02-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 02-2023 using the scoring method of applying weights at all sites across the spike protein</li> <li>02-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 02-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation</li> </ul> <p>03_2023</p> <ul> <li>03-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 03-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein</li> <li>03-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 03-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation</li> <li>03-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 03-2023 using the scoring method of applying weights at all sites across the spike protein</li> <li>03-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 03-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation</li> </ul>