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Genetic and cellular/biochemical data for mouse Pycard gene differences altering mRNA turnover and IL-1b release

<p>Quantitative trait locus mapping for interleukin-1b release after inflammasome priming and activation was performed on bone marrow-derived macrophages (BMDM) from an AKRxDBA/2 strain intercross.  The strongest associated locus mapped very close to the <i>Pycard</i> gene on chromosome 7, which codes for the inflammasome adaptor protein apoptosis-associated speck-like protein containing a CARD (ASC).  The DBA/2 and AKR <i>Pycard</i> genes only differ at single nucleotide polymorphism (SNP) in their 3' untranslated region (UTR).  DBA/2 vs. AKR BMDM had increased levels of <i>Pycard</i> mRNA expression and ASC protein, and increased inflammasome speck formation, which was associated with increased <i>Pycard</i> mRNA stability without an increased transcription rate.  CRIPSR/Cas9 gene editing was performed on DBA/2 embryonic stem cells to change the <i>Pycard</i> 3'UTR SNP from the DBA/2 to the AKR allele.  This single base change significantly reduced <i>Pycard</i> expression and inflammasome activity after cells were differentiated into macrophages due to reduced <i>Pycard</i> mRNA stability.</p>

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32/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
0
Harmonization
12
Access
12
Reuse readiness
0
Engagement
8