FIGURE 2 in A phylogenetic analysis of Neotoma varia (Rodentia: Cricetidae), a rediscovered, endemic, and threatened rodent from Datil Island, Sonora, Mexico

FIGURE 2. Phylogenetic trees of the 828-bp fragment of the Cyt b gene generated from the analyzed Neotoma specimens. The numbers of haplotypes and subspecies at the tip of each branch follow Table 1. The trees were constructed using the 50% majority rule consensus algorithm (except in maximum-likelihood). Values in the nodes are branch support for the analyses. The N. leucodon sequence was included as the ingroup and N. picta, N. isthmica, and N. mexicana as the outgroup. (A) Maximum-likelihood tree using the GTR+I model; (B) neighbor-joining tree, genetic distances were calculated using the Jukes-Cantor model, percentage differences per node are in table 2. (C) Bayesian inference performed using the GTR+I model.