Figure 3 in Phoronid phylogenetics (Brachiopoda; Phoronata): evidence from morphological cladistics, small and large subunit rDNA sequences, and mitochondrial cox1

Figure 3. Phoronid phylogeny. Most probable Bayesian likelihood tree (P = 0.68) from analysis of the 13tx alignment with clade credibility values from the majority rule consensus tree, which had the same topology. Where two clade credibility values are shown the first was from a run with the chiton as outgroup (not shown), and the second from a run with Phoronis ovalis as outgroup. MrBayes run commands were: charset coding_1st = 1-621\3; charset coding_2nd = 2-621\3; charset coding_3rd = 3-621\3; charset non-coding = 622-4515; partition all_4 = 4: coding_1st, coding_2nd, coding_3rd, non-coding; set partition = all_4; lset applyto=(all) nst = 6 rates = invgamma; databreaks 621 2386; unlink shape = all, pinvar = all, statefreq = all, revmat = all; prset ratepr = variable; mcmc ngen = 106 samplefreq = 100 printfreq = 5000 savebrlens = yes; plot match = all; sumt burnin = 2002. The tree shown was drawn in PAUP*4. The.con file was imported and displayed as a phylogram. Clade credibility values were added in a graphics editor.