Skip to main content
zenodoopen

Mappability .bigwig reference files for hg38/hg19; various read lengths

<p>This dataset contains reference mappability .bigwig files for the reference genomes hg38 and hg19, for various read lengths. The files were generated with the GEM library (https://sourceforge.net/projects/gemlibrary/files/gem-library/Binary%20pre-release%203/GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2) using <a href="https://raw.githubusercontent.com/epigen/LIQUORICE/master/liquorice/create_mappability_bigwigs.sh">this</a> script (based on <a href="https://evodify.com/gem-mappability/">this</a> work).</p> <p>The files can be used as input for LIQUORICE (<a href="https://liquorice.readthedocs.io">https://liquorice.readthedocs.io</a>) - just select the file that matches your sequencing protocol (i.e. read length) and the reference genome of your mapped .bam files.</p>

ShareScore

36/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
8
Access
16
Reuse readiness
0
Engagement
4

Topics

Dataset details

Repository
zenodo
Published
September 23, 2021
License
cc-by-4.0
DOI
10.5281/zenodo.5521423

Scored with release 0.9.0

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.