TIGRFAM protein sequences named by taxonomy
<p>A set of 411 TIGRFAM protein families originally used for benchmarking sequence clustering programs. Sequences were downloaded from <a href="https://www.ncbi.nlm.nih.gov/genome/annotation_prok/tigrfams/">NCBI</a> and renamed by their original name (accession number) followed by their semi-colon separated NCBI taxonomy. For example, the first sequence in TIGRFAM00005.fas.gz is named:</p> <blockquote> <p>WP_000005837.1 RluA family pseudouridine synthase, partial [Bacillus anthracis];TIGR00005(group);cellular organisms(no rank);Bacteria(superkingdom);Terrabacteria group(clade);Firmicutes(phylum);Bacilli(class);Bacillales(order);Bacillaceae(family);Bacillus(genus);Bacillus cereus group(species group);Bacillus anthracis(species)</p> </blockquote>
ShareScore
36/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 0
Topics
Dataset details
- Repository
- zenodo
- Published
- October 31, 2022
- License
- cc-by-4.0
- DOI
- 10.5281/zenodo.7272092
Scored with release 0.9.0
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