hAMRonization Table Data

<p>hAMRonization</p> <p>This repo contains the hAMRonization module and CLI parser tools that combine the outputs of 18 (as of 2022-09-25) disparate antimicrobial resistance gene detection tools into a single unified format.</p> <p>This is an implementation of the&nbsp;<a href="https://github.com/pha4ge/hAMRonization/blob/master/docs/hAMRonization_specification_details.csv">hAMRonization AMR detection specification scheme</a>&nbsp;which supports gene presence/absence resistance and mutational resistance (if supported by the underlying tool).</p> <p>This supports a variety of summary options including an&nbsp;<a href="https://finlaymagui.re/assets/interactive_report_demo.html">interactive summary</a>.</p>