Lite Kraken/Bracken databases built using UHGG genomes

<p>Kraken/Braken databases for UHGG genomes.</p> <p>HUMAN_3006.tar.gz: Kraken/Bracken database for 3006 high quality species clusters of the UHGG (Beresford-Jones et al., 2022). Database was built from the single highest quality genome for each species cluster (n=3006).&nbsp;Uses&nbsp;the original&nbsp;GTDB v1.3&nbsp;taxonomy.</p> <p>UHGG_5987_KRAKEN.tar.gz:&nbsp;Kraken/Bracken database for 3006 high quality species clusters of the UHGG (Beresford-Jones et al., 2022).&nbsp;Species clusters are represented by a variable number of high&nbsp;quality genomes (n=5987 in total), selected to maximise represented&nbsp;taxonomic diversity. Uses a custom taxonomy modified from GTDB v2.1 with&nbsp;each species cluster being represented by a&nbsp;species level taxonomic annotation.&nbsp;</p> <p>&nbsp;</p> <p>Methods:</p> <p>Databases built using Kraken&nbsp;v2.1.2 and Bracken v2.6.2. Commands used to build the databases are included below.</p> <p>kraken2-build --build --db Kraken --threads 12</p> <p>bracken-build -d Kraken -k 35 -l 150 -t 12</p>