CATH Structural domains in AlphaFold2 models for 21 model organisms

<p>CATH structural domain assignments for AlphaFold2 models in 21 model organisms.</p> <p>The table&nbsp;cath-v4_3_0.alphafold-v2.2022-11-22.tsv contains the domain assignments with information on model quality, CATH superfamily and Class, organism, average pLDDT, percentage of residues not in secondary structure, globularity and domain origin (CATH-PDB, CATH-HMM,Pfam,newfams).</p> <p>Organisms included:</p> <p>Arabidopsis thaliana</p> <p>Caenorhabditis elegans</p> <p>Candida albicans</p> <p>Danio rerio</p> <p>Dictyostelium discoideum</p> <p>Drosophila melanogaster</p> <p>Escherichia coli</p> <p>Glycine max</p> <p>Homo sapiens</p> <p>Leishmania infantum</p> <p>Methanocaldococcus jannaschii</p> <p>Mus musculus</p> <p>Mycobacterium tuberculosis</p> <p>Oryza sativa</p> <p>Plasmodium falciparum</p> <p>Rattus norvegicus</p> <p>Saccharomyces cerevisiae</p> <p>Schizosaccharomyces pombe</p> <p>Staphylococcus aureus</p> <p>Trypanosoma cruzi</p> <p>Zea mays</p> <p>&nbsp;</p> <p>The archive</p> <pre>cath-v4_3_0.alphafold-v2.2022-11-22.by_superfamily.tgz</pre> <p>contains all domains assigned by CATH in the dataset as PDB files, divided by superfamily.</p> <p>Alternatively, if you&#39;re interested in a particular organism, an individual tarball containing all CATH domains as PDB files is available</p> <p>e.g. cath-v4_3_0.alphafold-v2.2022-11-22.arabidopsis_thaliana.tgz</p> <p>All domains included in this release are named as af_[UniProt_ID]_[start]_[stop].</p> <p>&nbsp;</p>