scPDB BO1 subset (protein ligand-binding sites)
<p>The BO1 subset of the scPDB database.</p> <p>BO1 consists in 766 pairs of non-redundant binding-sites<br> (383 similar pairs, 383 dissimilar pairs).</p> <p>BO1 was describbed in:<br> ---<br> Eguida, M., & Rognan, D. (2020).<br> A computer vision approach to align and compare protein cavities:<br> application to fragment-based drug design.<br> Journal of Medicinal Chemistry, 63(13), 7127-7142.<br> https://doi.org/10.1021/acs.jmedchem.0c00422<br> ---</p> <p>The scPDB was recently describbed in:<br> ---<br> Desaphy, J., Bret, G., Rognan, D., & Kellenberger, E. (2015).<br> sc-PDB: a 3D-database of ligandable binding sites—10 years on.<br> Nucleic acids research, 43(D1), D399-D404.<br> https://doi.org/10.1093/nar/gku928<br> ---</p> <p>The scPDB is available at:<br> http://bioinfo-pharma.u-strasbg.fr/scPDB/<br> </p>
ShareScore
40/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 4