TreeAlign Input and Output datasets (initial submission)

<p>This repository provides the processed data necessary to reproduce the results for the initial TreeAlign paper submission.&nbsp;</p> <p>This includes the following:</p> <ul> <li>Single cell whole genome sequencing (scDNA) <ul> <li>Copy number profiles</li> <li>B allele frequency profiles</li> <li>phylogenetic trees computed with HDBSCAN</li> <li>benchmarking results vs other methods</li> </ul> </li> <li>10X single cell RNA sequencing (scRNA) <ul> <li>count matrices</li> <li>reference and total read counts at heterozygous SNPs</li> <li>meta data</li> </ul> </li> <li>TreeAlign output <ul> <li>Clone assignment for expression profiles</li> <li>p(k) scores</li> <li>p(a) scores</li> </ul> </li> </ul>